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Institution	Date	Title	Author
國立臺灣海洋大學	2011-01	A database of simulated CBM structures by feature-incoporated alignment	Wei-Yao Chou;Tun-Wen Pai;Ting-Ying Jiang;Wei-I Chou;Chuan-Yi Tang Margaret Dah-Tsyr Chang
國立臺灣海洋大學	2011	Identifying Significant Associations of Orthologous Simple Sequence Repeats with Gene Ontologies	Chien-Ming Chen;Chia-Sheng Chuang;Zhen-Li Huang;Tun-Wen Pai;Wen-Shyong Tzou;Chin-Hua Hu
國立臺灣海洋大學	2011	Linear B-Cell Epitope Prediction Based on Support Vector Machine and Propensity Scales	Hsin-Wei Wang;Ya-Chi Lin;Hao-Teng Chang;Tun-Wen Pai
國立臺灣海洋大學	2011	Regulation of human CYP11B1 and CYP11B2 promoters by transposable elements and conserved cis elements	Li-Chuan Cheng;Tun-Wen Pai;Lih-Ann Li
國立臺灣海洋大學	2011	Linear epitope prediction with a combination of support vector machine classification and amino acid propensity identification	Hsin-Wei Wang;Ya-Chi Lin;Tun-Wen Pai;Hao-Teng Chang
國立臺灣海洋大學	2011	Prediction of B-cell Linear Epitopes with a Combination of Support Vector Machine Classification and Amino Acid Propensity Identification	Hsin-Wei Wang;Ya-Chi Lin;Tun-Wen Pai;Hao-Teng Chang
國立臺灣海洋大學	2010-12	Designing a Dedicated Database for Eukaryotic Algae Species – A Case Study on Cross-species Comparison of P450 Enzymes	Tsan-Huang Shih;Tsai-Ling Lee;Kuan-Yuan Chang;Yu-Ping Hsu;Tun-Wen Pai
國立臺灣海洋大學	2010-12	BiMFG : Bioinformatics Tools for Marine and Freshwater Species	Tsan-Huang Shih;Chien-Ming Chen;Hsin-Wei Wang;Tun-Wen Pai;Hao-Teng Chang
國立臺灣海洋大學	2010-10-01	Efficient algorithms for identifying orthologous simple sequence repeats of disease genes	Chien-Ming Chen;Chih-Chia Chen;Tsan-Huang Shih;Tun-Wen Pai;Chin-Hua Hu;Wen-Shyong Tzou
國立臺灣海洋大學	2010-09	Using Solid Angles to Detect Protein Docking Regions by CUDA Parallel Algorithms	Ying-Tsang Lo;Yueh-Lin Tsai;Hsin-Wei Wang;Yu-Ping Hsu;Tun-Wen Pai
國立臺灣海洋大學	2010-09	Inhibition of the Interactions between Eosinophil Cationic Protein and Airway Epithelial Cells by Traditional Chinese Herbs	Hao-Teng Chang;Louis J. Tseng;Ta-Jen Hung;Blacky T. Kao;Wei-Yong Lin;Tan-chi Fan;Margaret Dah-Tsyr Chang;Tun-Wen Pai
國立臺灣海洋大學	2010-09	Cross-species Functional Conservation and in silico Gene Replacement for HIF Pathways	Chia-Sheng Chuang;Chih-Chia Chen;Tun-Wen Pai;Chin-Hua Hu;Hao-Teng Chang;Margaret Dah-Tsyr Chang
國立臺灣海洋大學	2010-09	Ligand-binding residue prediction for carbohydrate-binding modules by Feature-incorporated alignment	Wei-Yao Chou;Wei-I Chou;Tun-Wen Pai;Shu-Chuan Lin;Ting-Ying Jiang;Chuan-Yi Tang Margaret Dah-Tsyr Chang
國立臺灣海洋大學	2010-09	Prediction of protein-protein interaction in starch branching enzyme II and starch phosphorylase	Chih-Chia Chen;Tsan-Huang Shih;Yuan-Tih Ko;Tun-Wen Pai
中國醫藥大學	2010-09	Inhibition of the interactions between eosinophil cationic protein and airway epithelial cells by traditional Chinese herbs	張顥騰(Hao-Teng Chang)*; (Louis J. Tseng); (Ta-Jen Hung); (Blacky T. Kao); 林維勇(Wei-Yong Lin); (Tan-chi Fan); (Margaret Dah-Tsyr Chang); (Tun-Wen Pai)
國立臺灣海洋大學	2010-07	Update Management of Data-Driven Bioinformatics Softwares: A Case Study of GOSH System	Tsan-Huang Shih;Chien-Ming Chen;Jhen-Li Huang;Tun-Wen Pai
國立臺灣海洋大學	2010-02	Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules	Wei-Yao Chou;Wei-I Chou;Tun-Wen Pai;Shu-Chuan Lin;Ting-Ying Jiang;Chuan-Yi Tang;Margaret Dah-Tsyr Chang
國立臺灣海洋大學	2010-02	Prediction of Regulatory Molecules for Enhancement of EGFR Overexpression Triggered by Signal Peptide of Ribonuclease 3	Hao-Teng Chang;Chung-Hsiao Chao;Yu-Fong Lin;Louis J. Tseng;Tun-Wen Pai;Tsan-Huang Shih;Margaret Dah-Tsyr Chang;Pei-Wen Tsai
國立臺灣海洋大學	2010	A comprehensive system for identifying internal repeat substructures of proteins	Hua-Ying Kao;Tsang-Huang Shih;Tun-Wen Pai;Ming-Da Lu;Hui-Huang Hsu
國立臺灣海洋大學	2010	Multiple Structure Alignment Based on Geometrical Correlation of Secondary Structure Elements	TUN-WEN PAI;RUEI-HSIANG CHANG;CHIEN-MING CHEN;PO-HAN SU;LEE-JYI WANG;KUEN-TSAIR LAY;KUO-TORNG LAN
國立臺灣海洋大學	2010	Detection and Alignment of 3D Domain Swapping Proteins Using Angle-distance Image-based Secondary Structural Matching Techniques	Chia-Han Chu;Wei-Cheng Lo;Hsin-Wei Wang;Yen-Chu Hsu;Jenn-Kang Hwang;Ping-Chiang Lyu;Tun-Wen Pai;Chuan Yi Tang
國立臺灣海洋大學	2010	System Integration of Heterogeneous Bioinformatics Databases for Identifying Orthologous SSRs of Disease Genes	Wei-Heng Tai;Ching-Han Yang;Chien-Ming Chen;Tun-Wen Pai
國立臺灣海洋大學	2009-09	Prediction of Conformational Epitopes by Geometrical Affinity and Chemical Propensity Approaches	Cheng-Ying Tang;Wei-Kuo Wu;Yu-Ping Hsu;Hsin-Wei Wang;Tun-Wen Pai;Hao-Teng Chang
中國醫藥大學	2009-03-16	B-Cell Conformational Epitope Prediction based on Structural Relationship and Antigenic Characteristics	(Wei-Kuo Wu); (Wei-Chun Chung); 張顥騰(Hao-Teng Chang); (Ron-shan Cheng); (Tun-Wen Pai)*; (Wei-Kuo Wu)
國立臺灣海洋大學	2009	B-Cell Conformational Epitope Prediction based on Structural Relationship and Antigenic Characteristics	Wei-Kuo Wu;Wei-Chun Chung;Hao-Teng Chang;Ron-shan Cheng;Tun-Wen Pai

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