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Institution	Date	Title	Author
元智大學	2012-01	GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group	Tzong-Yi Lee; Wen-Chi Chang; Justin Bo-Kai Hsu; Tzu-Hao Chang; Dray-Ming Shien
元智大學	2011-11	Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data	Chia-Hung Chien; Yi-Ming Sun; Wen-Chi Chang; Pei-Yun Chiang-Hsieh; Tzong-Yi Lee; Wei-Chih Tsai; Jorng-Tzong Horng; Ann-Ping Tsou; Hsien-Da Huang
元智大學	2011-11	Incorporating Evolutionary Information and Functional Domains for Identifying RNA Splicing Factors in Humans	Justin BoKai Hsu; Neil Arvin Bretaña; Tzong-Yi Lee; Hsien-Da Huang
元智大學	2011-11	Investigation and identification of protein gamma-glutamyl carboxylation sites	Tzong-Yi Lee; Cheng-Tsung Lu; Shu-An Chen; Neil Arvin Bretaña; Tzu-Hsiu Cheng; Min-Gang Su; Kai-Yao Huang
元智大學	2011-11	Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data	Chia-Hung Chien; Yi-Ming Sun; Wen-Chi Chang; Pei-Yun Chiang-Hsieh; Tzong-Yi Lee; Wei-Chih Tsai; Jorng-Tzong Horng; Ann-Ping Tsou; Hsien-Da Huang
元智大學	2011-10	Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites	Cheng-Tsung Lu; Shu-An Chen; Neil Arvin Bretaña; Tzu-Hsiu Cheng; Tzong-Yi Lee
元智大學	2011-07	SNOSite: Exploiting Maximal Dependence Decomposition to Identify Cysteine S-Nitrosylation with Substrate Site Specificity	Tzong-Yi Lee; Yi-Ju Chen; Tsung-Cheng Lu; Hsien-Da Huang; Yu-Ju Chen
元智大學	2011-07	Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences	Tzong-Yi Lee; Zong-Qing Lin; Sheng-Jen Hsieh; Neil Arvin Bretaña; Cheng-Tsung Lu
元智大學	2011-07	SNOSite: Exploiting Maximal Dependence Decomposition to Identify Cysteine S-Nitrosylation with Substrate Site Specificity	Tzong-Yi Lee; Yi-Ju Chen; Tsung-Cheng Lu; Hsien-Da Huang; Yu-Ju Chen
元智大學	2011-07	Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties	Shu-An Chen; Ou Y.-Y.; Tzong-Yi Lee; Michael Gromiha
元智大學	2011-07	miRTar: an integrated system for identifying miRNA-target interactions in Human	Justin Bo-Kai Hsu; Chih-Min Chiu; Sheng-Da Hsu; Wei-Yun Huang; Chia-Hung Chien; Tzong-Yi Lee; Hsien-Da Huang
元智大學	2011-07	SNOSite: Exploiting Maximal Dependence Decomposition to Identify Cysteine S-Nitrosylation with Substrate Site Specificity	Tzong-Yi Lee; Yi-Ju Chen; Tsung-Cheng Lu; Hsien-Da Huang; Yu-Ju Chen
元智大學	2011-07	miRTar: an integrated system for identifying miRNA-target interactions in Human	Justin Bo-Kai Hsu; Chih-Min Chiu; Sheng-Da Hsu; Wei-Yun Huang; Chia-Hung Chien; Tzong-Yi Lee; Hsien-Da Huang
元智大學	2011-06	PlantPhos: using Maximal Dependence Decomposition to Identify Plant Phosphorylation Sites with Substrate Site Specificity	Tzong-Yi Lee; Neil ARVIN Bretana; Tsung-Cheng Lu
元智大學	2011-03	Incorporating distant sequence features and radial basis function networks to identify ubiquitin conjugation sites	Tzong-Yi Lee; Shu-An Chen; Hsin-Yi Hung; Ou Y.-Y.
元智大學	2011-03	Incorporating distant sequence features and radial basis function networks to identify ubiquitin conjugation sites	Tzong-Yi Lee; Shu-An Chen; Hsin-Yi Hung; Ou Y.-Y.
元智大學	2011-01	RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans	Tzong-Yi Lee; Justin Bo-Kai Hsu; Wen-Chi Chang; Hsien-Da Huang
元智大學	2010-10	Incorporating significant amino acid pairs to identify O-linked glycosylation sites on transmembrane proteins and non-transmembrane proteins	Shu-An Chen; Tzong-Yi Lee; Ou Y.-Y.
亞洲大學	2006	An Agent-Based System to Discover Protein-Protein Interactions, Identify Protein Complexes and Proteins with Multiple Peptide Mass Fingerprints	Tzong-Yi Lee;Jorng-Tzong Horng;Hsueh-Fen Juan;Hsien-Da Huang;Li-Cheng Wu;Feng-Mao Lin
亞洲大學	2005	KinasePhos: a Web Tool for Identifying Protein Kinase-Specific Phosphorylation Sites	Hsien-Da Huang;Tzong-Yi Lee;Jorng-Tzong Horng
元智大學	1905-7-6	Incorporating signiﬁcant amino acid pairs and protein domains to predict RNA splicing-related proteins with functional roles	Justin Bo-Kai Hsu; Kai-Yao Huang; Julia Weng; Chien-Hsun Huang; Tzong-Yi Lee

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