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機構	日期	題名	作者
國立臺灣海洋大學	2018-11	Borders of Cis-Regulatory DNA Sequences Preferentially Harbor the Divergent Transcription Factor Binding Motifs in the Human Genome.	Jia-Hsin Huang; Ryan Shun-Yuen Kwan; Zing Tsung-Yeh Tsai; Tzu-Chieh Lin; Huai-Kuang Tsai
國立臺灣海洋大學	2018-09	CATANA: a tool for generating comprehensive annotations of alternative transcript events	Cheng-Kai Shiau; Jia-Hsin Huang; Huai-Kuang Tsai
國立臺灣海洋大學	2017-10	Comparative genomic analyses highlight the contribution of pseudogenized protein-coding genes to human lincRNAs	Wan-Hsin Liu; Zing Tsung-Yeh Tsai; Huai-Kuang Tsai
國立臺灣海洋大學	2017-08	IsoPlot: a database for comparison of mRNA isoforms in fruit fly and mosquitoes	I-Man Ng; Jia-Hsin Huang; Shang-Chi Tsai; Huai-Kuang Tsai
國立臺灣海洋大學	2015-08	Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast	Zing Tsung-Yeh Tsai; Shin-Han Shiu; Huai-Kuang Tsai
國立臺灣海洋大學	2015-07	Genome-wide analysis of enhancer RNA in gene regulation across 12 mouse tissues	Jen-Hao Cheng; David Zhi-Chao Pan; Zing Tsung-Yeh Tsai; Huai-Kuang Tsai
國立臺灣海洋大學	2014-07	Epitope and Paratope Region Analysis	Ying-Tsang Lo; Tun-Wen Pai; Hui-Huang Hsu; Huai-Kuang Tsai
國立臺灣海洋大學	2014-01	Associations between intronic non-B DNA structures and exon skipping	Zing Tsung-Yeh Tsai; Wen-Yi Chu; Jen-Hao Cheng; Huai-Kuang Tsai
國立臺灣海洋大學	2013-05	The Impact of Trans-Regulation on the Evolutionary Rates of Metazoan Proteins	Yi-Ching Chen; Jen-Hao Cheng; Zing Tsung-Yeh Tsai; Huai-Kuang Tsai; Trees-Juen Chuang
國立臺灣海洋大學	2012-12	Evolution of cis-regulatory elements in yeast de novo and duplicated new genes	Zing Tsung-Yeh Tsai; Huai-Kuang Tsai; Jen-Hao Cheng; Chih-Hsu Lin; Yuan-Fan Tsai; Daryi Wang
國立臺灣海洋大學	2012-04	The Impact of Normalization and Phylogenetic Information on Estimating the Distance for Metagenomes	Chien-Hao Su; Tse-Yi Wang; Ming-Tsung Hsu; Francis Cheng-Hsuan Weng; Cheng-Yan Kao; Daryi Wang; Huai-Kuang Tsai
國立臺灣海洋大學	2012-01	De novo motif discovery facilitates identification of interactions between transcription factors in Saccharomyces cerevisiae	Mei-Ju May Chen; Lih-Ching Chou; Tsung-Ting Hsieh; Ding-Dar Lee; Kai-Wei Liu; Chi-Yuan Yu; Yen-Jen Oyang; Huai-Kuang Tsai; Chien-Yu Chen
國立臺灣海洋大學	2011-12	MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions	Tse-Yi Wang; Chien-Hao Su; Huai-Kuang Tsai
國立臺灣海洋大學	2011-08	MetaABC—an integrated metagenomics platform for data adjustment, binning and clustering	Chien-Hao Su; Ming-Tsung Hsu; Tse−Yi Wang; Sufeng Chiang; Jen-Hao Cheng; Francis C. Weng; Cheng−Yan Kao; Daryi Wang; Huai-Kuang Tsai
國立臺灣海洋大學	2011-05	Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast	Krishna BS Swamy; Wen-Yi Chu; Chun-Yi Wang; Huai-Kuang Tsai; Daryi Wang
國立臺灣海洋大學	2010-12	Genome-wide analysis of the cis-regulatory modules of divergent gene pairs in yeast	Chien-Hao Su; Ching-Hua Shih; Tien-Hsien Chang; Huai-Kuang Tsai
國立臺灣海洋大學	2009-08	Co-expression of Neighboring Genes in the Zebrafish (Danio rerio) Genome	Huai-Kuang Tsai; Pei-Ying Huang; Cheng-Yan Kao; Daryi Wang
國立臺灣海洋大學	2008	Discovering gapped binding sites of yeast transcription factors	Chien-Yu Chen; Huai-Kuang Tsai; Chen-Ming Hsu; Mei-Ju May Chen; Hao-Geng Hung; Grace Tzu-Wei Huang; Wen-Hsiung Li
國立臺灣海洋大學	2007-09	Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system	Huai-Kuang Tsai; Cindy PC Su; Mei-Yeh J Lu; Ching-Hua Shih; Daryi Wang
國立臺灣海洋大學	2006-07	Method for identifying transcription factor binding sites in yeast	Huai-Kuang Tsai; Grace Tzu-Wei Huang; Meng-Yuan Chou; Henry Horng-Shing Lu; Wen-Hsiung Li
國立臺灣海洋大學	2004	An evolutionary algorithm for large traveling salesman problems	Huai-Kuang Tsai; Jinn-Moon Yang; Yuan-Fang Tsai; Cheng-Yan Kao
國立臺灣海洋大學	2004	An evolutionary approach for gene expression patterns	Huai-Kuang Tsai; Jinn-Moon Yang; Yuan-Fang Tsai; Cheng-Yan Kao
國立臺灣海洋大學	2004	Designing multiple-use primer set for multiplex PCR by using compact GAs	Yu-Cheng Huang; Han-Yu Chuang; Huai-Kuang Tsai; Chun-Fan Chang; Cheng-Yan Kao
國立臺灣海洋大學	2003	Ranking genes for discriminability on microarray data	Han-Yu Chuang; Huai-Kuang Tsai; Yuan-Fan Tsai; Cheng-Yan Kao
國立臺灣海洋大學	2002	GEM: a Gaussian Evolutionary Method for predicting protein side-chain conformations	Jinn-Moon Yang; Chi-Hung Tsai; Ming-Jing Hwang; Huai-Kuang Tsai; Jenn-Kang Hwang; Cheng-Yan Kao

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