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Institution	Date	Title	Author
元智大學	Sep-22	MFPS_CNN: Multi-filter Pattern Scanning from Position-specific Scoring Matrix with Convolutional Neural Network for Efficient Prediction of Ion Transporters	Trinh-Trung-Duong Nguyen; Quang-Thai Ho; Yu-Chun Tarn; Ou Y.-Y.
元智大學	Sep-21	A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information	Nguyen Quoc Khanh Le; Quang-Thai Ho; Trinh-Trung-Duong Nguyen; Ou Y.-Y.
元智大學	Sep-18	DeepEfflux: a 2D convolutional neural network model for identifying families of efflux proteins in transporters	Semmy Wellem Taju; Trinh-Trung-Duong Nguyen; Nguyen-Quoc-Khanh Le; Rosdyana Mangir Irawan Kusuma; Ou Y.-Y.
元智大學	Sep-18	DeepEfflux: a 2D convolutional neural network model for identifying families of efflux proteins in transporters	Semmy Wellem Taju; Trinh-Trung-Duong Nguyen; Nguyen-Quoc-Khanh Le; Rosdyana Mangir Irawan Kusuma; Ou Y.-Y.
元智大學	Oct-21	TRP-BERT: Discrimination of transient receptor potential (TRP) channels using contextual representations from deep bidirectional transformer based on BERT	Syed Muazzam Ali Shah; Ou Y.-Y.
元智大學	Oct-20	Using language representation learning approach to efficiently identify protein complex categories in electron transport chain	Trinh-Trung-Duong Nguyen; Ou Y.-Y.; Nguyen-Quoc-Khanh Le; Dinh-Van Phan; Quang-Thai Ho
元智大學	Oct-20	TNFPred: identifying tumor necrosis factors using hybrid features based on word embeddings	Trinh-Trung-Duong Nguyen; Nguyen-Quoc-Khanh Le; Quang-Thai Ho; Dinh-Van Phan; Ou Y.-Y.
元智大學	Nov-21	Identification of efflux proteins based on contextual representations with deep bidirectional transformer encoders	Semmy Wellem Taju; Syed Muazzam Ali Shah; Ou Y.-Y.
元智大學	Nov-21	Addressing data imbalance problems in ligand-binding site prediction using a variational autoencoder and a convolutional neural network	Trinh-Trung-Duong Nguyen; Duc-Khanh Nguyen; Ou Y.-Y.
元智大學	Nov-20	A Self-Relevant CNN-SVM Model for Problem Classification in K-12 Question-Driven Learning	Eric Hsiao-Kuang Wu; Sung-En Chen; Jhao-Jhong Liu; Ou Y.-Y.; Min-Te Sun
元智大學	May-17	Identifying the molecular functions of electron transport proteins using radial basis function networks and biochemical properties	Nguyen-Quoc-Khanh Le; Trinh-Trung-Duong Nguyen; Ou Y.-Y.
元智大學	Mar-22	Use Chou''s 5-Steps Rule With Different Word Embedding Types to Boost Performance of Electron Transport Protein Prediction Model	Trinh-Trung-Duong Nguyen; Nguyen-Quoc-Khanh Le; Quang-Thai Ho; Dinh-Van Phan; Ou Y.-Y.
元智大學	Mar-21	Incorporating a transfer learning technique with amino acid embeddings to efficiently predict N-linked glycosylation sites in ion channels	Trinh-Trung-Duong Nguyen; Nguyen-Quoc-Khanh Le; The-Anh Tran; Dinh-Minh Pham; Ou Y.-Y.
元智大學	Jun-19	iMotor-CNN: Identifying molecular functions of cytoskeleton motor proteins using 2D convolutional neural network via Chou''''s 5-step rule	Nguyen Quoc Khanh Le; Edward Kien Yee Yapp; Ou Y.-Y.; Hui-Yuan Yeh
元智大學	Jun-19	DeepIon: Deep learning approach for classifying ion transporters and ion channels from membrane proteins	Semmy Wellem Taju; Ou Y.-Y.
元智大學	Jun-17	Incorporating deep learning with convolutional neural networks and position specific scoring matrices for identifying electron transport proteins	Nguyen-Quoc-Khanh Le; Quang-Thai Ho; Ou Y.-Y.
元智大學	Jun-17	Incorporating deep learning with convolutional neural networks and position specific scoring matrices for identifying electron transport proteins	Nguyen-Quoc-Khanh Le; Quang-Thai Ho; Ou Y.-Y.
元智大學	Jul-22	Using multiple convolutional window scanning of convolutional neural network for an efficient prediction of ATP‐binding sites in transport proteins	Trinh‐Trung‐Duong Nguyen; Syun Chen; Quang‐Thai Ho; Ou Y.-Y.
元智大學	Jul-19	Using word embedding technique to efficiently represent protein sequences for identifying substrate specificities of transporters	Trinh-Trung-Duong Nguyen; Nguyen-Quoc-Khanh Le; Quang-Thai Ho; Dinh-Van Phan; Ou Y.-Y.
元智大學	Jan-22	mCNN-ETC: identifying electron transporters and their functional families by using multiple windows scanning techniques in convolutional neural networks with evolutionary information of protein sequences	Quang-Thai Ho; Nguyen Quoc Khanh Le; Ou Y.-Y.
元智大學	Jan-22	An Extensive Examination of Discovering 5-Methylcytosine Sites in Genome-Wide DNA Promoters Using Machine Learning Based Approaches	Trinh Trung Duong Nguyen; The-Anh Tran; Le Nguyen Quoc Khanh; Dinh-Minh Pham; Ou Y.-Y.
元智大學	Feb-19	Using two-dimensional convolutional neural networks for identifying GTP binding sites in Rab proteins	Nguyen Quoc Khanh Le; Quang-Thai Ho; Ou Y.-Y.
元智大學	Dec-21	Using k-mer embeddings learned from a Skip-gram based neural network for building a cross-species DNA N6-methyladenine site prediction model	Trinh Trung Duong Nguyen; Van Ngu Trinh; Nguyen Quoc Khanh Le; Ou Y.-Y.
元智大學	Dec-18	Incorporating post translational modification information for enhancing the predictive performance of membrane transport proteins	Nguyen Quoc Khanh Le; Green Arther Sandag; Ou Y.-Y.
元智大學	Dec-16	Incorporating efficient radial basis function networks and significant amino acid pairs for predicting GTP binding sites in transport proteins	Nguyen-Quoc-Khanh Le; Ou Y.-Y.

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